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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1411
ChIP-seq
822
total RNA-seq
308
ATAC-seq
178
DNase-seq
176
single cell RNA-seq
86
RNA microarray
37
pCHi-C
28
snATAC-seq
24
Hi-C
22
WGBS
14
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
22
DNA methylation
Date released
12
July, 2019
7
November, 2018
3
August, 2017
Available data
16
bam
15
bed bedMethyl
15
bigBed bedMethyl
15
bigWig
8
fastq
Organism
22
Homo sapiens
Biosample type
primary cell
21
tissue
1
cell line
Organ
8
heart
6
adipose tissue
connective tissue
5
liver
4
pancreas
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
22
AMP
Genome assembly (visualization)
15
GRCh38
Lab
22
AMP-T2D consortium
biosample_type!
primary cell
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
22 results
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WGBS
tissue
heart left ventricle
4
liver
3
aorta
2
body of pancreas
2
heart right ventricle
2
+ See 6 more…
cell line
HepG2
1
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