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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
58
WGBS
57
pCHi-C
34
Hi-C
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
58
DNA methylation
18
Transcription
Date released
41
May, 2022
22
July, 2019
7
August, 2017
6
February, 2021
Available data
41
zippedFastqFolder
36
bam
35
bigWig
24
tsv
bed bedMethyl
17
bigBed bedMethyl
17
fastq
Organism
76
Homo sapiens
Biosample type
49
primary cell
27
tissue
Organ
49
pancreas
47
epithelium
7
adipose tissue
7
connective tissue
7
liver
4
brain
3
heart
2
musculature of body
1
blood vessel
1
kidney
1
vasculature
Project
47
HPAP
29
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
Lab
47
Klaus Kaestner, Upenn
29
AMP-T2D consortium
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
76 results
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WGBS
small RNA-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
tissue
liver
3
1
right lobe of liver
1
2
subcutaneous abdominal adipose tissue
3
body of pancreas
2
heart left ventricle
2
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