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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1823
ChIP-seq
988
total RNA-seq
509
ATAC-seq
345
single cell RNA-seq
212
DNase-seq
57
snATAC-seq
55
pCHi-C
52
WGBS
34
Hi-C
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
52
DNA methylation
Date released
41
May, 2022
7
August, 2017
February, 2021
4
July, 2019
Available data
41
zippedFastqFolder
18
bam
17
bed bedMethyl
bigBed bedMethyl
17
bigWig
11
fastq
Organism
52
Homo sapiens
Biosample type
41
primary cell
11
tissue
Organ
41
epithelium
41
pancreas
4
adipose tissue
4
connective tissue
4
liver
2
heart
1
blood vessel
1
vasculature
Project
41
HPAP
11
AMP
Lab
41
Klaus Kaestner, Upenn
11
AMP-T2D consortium
files.file_type!
bigBed bedMethyl
month_released!
February, 2021
BIOSAMPLE
ASSAY
52 results
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WGBS
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
tissue
liver
3
subcutaneous abdominal adipose tissue
3
heart left ventricle
2
adipose tissue
1
aorta
1
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