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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
449
ChIP-seq
ATAC-seq
176
single cell RNA-seq
154
total RNA-seq
87
RNA microarray
40
pCHi-C
28
snATAC-seq
23
Hi-C
11
RRBS
11
WGBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNase-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
11
DNA methylation
Date released
7
August, 2017
4
July, 2019
Available data
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
bigWig
11
fastq
Organism
11
Homo sapiens
Biosample type
primary cell
11
tissue
Organ
4
adipose tissue
4
connective tissue
4
liver
2
heart
1
blood vessel
1
vasculature
Project
11
AMP
Lab
11
AMP-T2D consortium
files.file_type!
bigWig
assay_title!
ATAC-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
11 results
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WGBS
tissue
liver
3
subcutaneous abdominal adipose tissue
3
heart left ventricle
2
adipose tissue
1
aorta
1
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