Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
481
ChIP-seq
395
ATAC-seq
263
single cell RNA-seq
249
total RNA-seq
87
RNA microarray
84
snATAC-seq
57
pCHi-C
54
WGBS
25
Hi-C
10
MeRIP-seq
6
RRBS
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
54
DNA methylation
Date released
41
May, 2022
7
August, 2017
6
February, 2021
July, 2019
Available data
41
zippedFastqFolder
17
fastq
9
bam
9
bed bedMethyl
9
bigBed bedMethyl
bigWig
6
tsv
Organism
54
Homo sapiens
Biosample type
47
primary cell
7
tissue
Organ
47
epithelium
47
pancreas
4
adipose tissue
4
connective tissue
3
liver
Project
47
HPAP
7
AMP
Lab
47
Klaus Kaestner, Upenn
7
AMP-T2D consortium
files.file_type!
bigWig
month_released!
July, 2019
BIOSAMPLE
ASSAY
54 results
search-icon
table-tab-icon
Clear Filters
WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
liver
3
subcutaneous abdominal adipose tissue
3
adipose tissue
1
Download