Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
395
ATAC-seq
263
single cell RNA-seq
249
total RNA-seq
87
RNA microarray
84
snATAC-seq
57
pCHi-C
54
WGBS
25
Hi-C
10
MeRIP-seq
6
RRBS
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
54
DNA methylation
Date released
41
May, 2022
7
August, 2017
6
February, 2021
July, 2019
Available data
41
zippedFastqFolder
17
fastq
9
bam
9
bed bedMethyl
9
bigBed bedMethyl
bigWig
6
tsv
Organism
54
Homo sapiens
Biosample type
47
primary cell
7
tissue
Organ
47
epithelium
47
pancreas
4
adipose tissue
4
connective tissue
3
liver
Project
47
HPAP
7
AMP
Lab
47
Klaus Kaestner, Upenn
7
AMP-T2D consortium
files.file_type!
bigWig
month_released!
July, 2019
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
54 results
search-icon
table-tab-icon
Clear Filters
WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
liver
3
subcutaneous abdominal adipose tissue
3
adipose tissue
1
Download