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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
342
ATAC-seq
253
ChIP-seq
206
total RNA-seq
158
single cell RNA-seq
85
RNA microarray
84
snATAC-seq
51
WGBS
34
Hi-C
25
pCHi-C
21
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
51
DNA methylation
Date released
41
May, 2022
7
August, 2017
3
July, 2019
Available data
41
zippedFastqFolder
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
17
fastq
tsv
Organism
51
Homo sapiens
Biosample type
41
primary cell
10
tissue
Organ
41
epithelium
41
pancreas
4
adipose tissue
4
connective tissue
4
liver
2
heart
Project
41
HPAP
10
AMP
Lab
41
Klaus Kaestner, Upenn
10
AMP-T2D consortium
files.file_type!
tsv
bam
BIOSAMPLE
ASSAY
51 results
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WGBS
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
tissue
liver
3
subcutaneous abdominal adipose tissue
3
heart left ventricle
2
adipose tissue
1
right lobe of liver
1
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