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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1668
ChIP-seq
1403
total RNA-seq
432
ATAC-seq
278
single cell RNA-seq
202
DNase-seq
87
RNA microarray
56
pCHi-C
36
snATAC-seq
33
Hi-C
23
WGBS
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
23
DNA methylation
Date released
12
July, 2019
9
August, 2017
2
November, 2018
Available data
13
bam
12
bed bedMethyl
12
bigBed bedMethyl
12
bigWig
6
fastq
Organism
23
Homo sapiens
Biosample type
23
tissue
Organ
8
heart
6
adipose tissue
6
connective tissue
4
liver
2
blood vessel
2
pancreas
2
vasculature
1
limb
1
musculature of body
Project
23
AMP
Genome assembly (visualization)
12
GRCh38
Lab
23
AMP-T2D consortium
files.run_type!
paired-ended
BIOSAMPLE
ASSAY
23 results
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WGBS
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
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