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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1465
ChIP-seq
1444
total RNA-seq
526
ATAC-seq
362
single cell RNA-seq
198
DNase-seq
87
RNA microarray
84
snATAC-seq
59
WGBS
57
pCHi-C
34
Hi-C
18
small RNA-seq
15
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
59
DNA methylation
Date released
41
May, 2022
12
July, 2019
August, 2017
November, 2018
6
February, 2021
Available data
41
zippedFastqFolder
9
bam
8
bed bedMethyl
8
bigBed bedMethyl
8
bigWig
6
fastq
6
tsv
Organism
59
Homo sapiens
Biosample type
47
primary cell
12
tissue
Organ
47
epithelium
47
pancreas
8
heart
2
blood vessel
2
vasculature
1
limb
1
liver
1
musculature of body
Project
47
HPAP
12
AMP
Genome assembly (visualization)
8
GRCh38
Lab
47
Klaus Kaestner, Upenn
12
AMP-T2D consortium
month_released!
November, 2018
August, 2017
BIOSAMPLE
ASSAY
59 results
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WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
aorta
2
heart right ventricle
2
heart
1
muscle of leg
1
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