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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1758
ChIP-seq
1135
total RNA-seq
525
ATAC-seq
363
single cell RNA-seq
210
DNase-seq
86
RNA microarray
84
snATAC-seq
69
WGBS
55
pCHi-C
34
Hi-C
21
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
69
DNA methylation
5
DNA accessibility
Date released
41
May, 2022
14
July, 2019
8
November, 2018
6
February, 2021
4
August, 2017
1
October, 2019
Available data
41
zippedFastqFolder
21
bam
20
bigWig
16
fastq
15
bed bedMethyl
15
bigBed bedMethyl
6
tsv
5
bed narrowPeak
5
bigBed narrowPeak
1
tar
Organism
74
Homo sapiens
Biosample type
48
primary cell
25
tissue
1
cell line
Organ
53
pancreas
48
epithelium
8
heart
adipose tissue
6
connective tissue
5
liver
3
blood vessel
3
vasculature
2
spleen
1
brain
1
kidney
1
limb
1
musculature of body
1
vein
Project
47
HPAP
27
AMP
Genome assembly (visualization)
15
GRCh38
5
hg19
Lab
47
Klaus Kaestner, Upenn
27
AMP-T2D consortium
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
74 results
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WGBS
FAIRE-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
endothelial cell of umbilical vein
1
tissue
heart left ventricle
4
liver
3
pancreas
2
1
aorta
2
body of pancreas
2
+ See 9 more…
cell line
HepG2
1
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