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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1678
ChIP-seq
1028
total RNA-seq
500
ATAC-seq
356
single cell RNA-seq
203
DNase-seq
86
RNA microarray
84
snATAC-seq
57
WGBS
52
pCHi-C
26
Hi-C
10
MeRIP-seq
6
RRBS
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
57
DNA methylation
Date released
41
May, 2022
July, 2019
7
November, 2018
6
February, 2021
3
August, 2017
Available data
41
zippedFastqFolder
14
fastq
7
bam
7
bed bedMethyl
7
bigBed bedMethyl
7
bigWig
6
tsv
Organism
57
Homo sapiens
Biosample type
47
primary cell
9
tissue
1
cell line
Organ
51
pancreas
47
epithelium
6
adipose tissue
connective tissue
4
liver
2
spleen
Project
47
HPAP
10
AMP
Genome assembly (visualization)
7
GRCh38
Lab
47
Klaus Kaestner, Upenn
10
AMP-T2D consortium
organ_slims!
connective tissue
month_released!
July, 2019
BIOSAMPLE
ASSAY
57 results
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WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
liver
3
body of pancreas
2
pancreas
2
spleen
2
cell line
HepG2
1
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