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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1702
ChIP-seq
1402
total RNA-seq
428
ATAC-seq
293
single cell RNA-seq
193
DNase-seq
86
RNA microarray
84
snATAC-seq
57
pCHi-C
28
WGBS
26
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
28
DNA methylation
1
Transcription
Date released
84
February, 2021
12
July, 2019
9
August, 2017
7
November, 2018
1
August, 2021
1
December, 2019
1
March, 2023
Available data
84
txt
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
11
fastq
1
tsv
Organism
113
Homo sapiens
Biosample type
113
tissue
2
cell line
Organ
84
bone element
51
pancreas
epithelium
8
heart
7
adipose tissue
7
connective tissue
5
liver
2
blood vessel
2
kidney
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
114
AMP
1
community
Genome assembly (visualization)
17
GRCh38
Lab
114
AMP-T2D consortium
1
Anna Gloyn, Oxford
Audit category:
84
inconsistent ontology term
1
audit script error
organ_slims!
epithelium
BIOSAMPLE
ASSAY
115 results
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RNA microarray
WGBS
shRNA RNA-seq
tissue
bone element
84
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
+ See 11 more…
cell line
EndoC-BH1
1
HepG2
1
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