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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1742
ChIP-seq
1363
total RNA-seq
422
ATAC-seq
290
single cell RNA-seq
193
DNase-seq
86
RNA microarray
84
snATAC-seq
57
pCHi-C
20
Hi-C
16
WGBS
6
RRBS
5
GRO-seq
5
STARR-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
16
DNA methylation
Date released
July, 2019
9
August, 2017
7
November, 2018
Available data
11
fastq
9
bam
9
bed bedMethyl
9
bigBed bedMethyl
9
bigWig
Organism
16
Homo sapiens
Biosample type
15
tissue
1
cell line
Organ
51
pancreas
epithelium
6
adipose tissue
6
connective tissue
4
liver
2
spleen
Project
16
AMP
Genome assembly (visualization)
9
GRCh38
Lab
16
AMP-T2D consortium
organ_slims!
epithelium
month_released!
July, 2019
BIOSAMPLE
ASSAY
16 results
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WGBS
tissue
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
body of pancreas
2
pancreas
2
+ See 1 more…
cell line
HepG2
1
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