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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1737
ChIP-seq
1461
total RNA-seq
484
ATAC-seq
270
single cell RNA-seq
182
DNase-seq
87
RNA microarray
84
snATAC-seq
67
WGBS
54
pCHi-C
31
Hi-C
19
RRBS
17
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
67
DNA methylation
17
Transcription
Date released
41
May, 2022
21
July, 2019
9
August, 2017
7
November, 2018
6
February, 2021
Available data
41
zippedFastqFolder
29
bam
28
bigWig
23
tsv
17
fastq
11
bed bedMethyl
11
bigBed bedMethyl
Organism
84
Homo sapiens
Biosample type
49
primary cell
34
tissue
1
cell line
Organ
53
pancreas
47
epithelium
9
adipose tissue
9
connective tissue
heart
8
liver
4
brain
3
musculature of body
2
blood vessel
2
spleen
2
vasculature
1
kidney
1
limb
Project
47
HPAP
37
AMP
Genome assembly (visualization)
28
GRCh38
17
hg19
Lab
47
Klaus Kaestner, Upenn
37
AMP-T2D consortium
organ_slims!
heart
BIOSAMPLE
ASSAY
84 results
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WGBS
small RNA-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
tissue
body of pancreas
2
2
liver
3
1
adipose tissue
3
right lobe of liver
1
2
subcutaneous abdominal adipose tissue
3
+ See 14 more…
cell line
HepG2
1
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