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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1717
ChIP-seq
1461
total RNA-seq
483
ATAC-seq
270
single cell RNA-seq
181
DNase-seq
87
RNA microarray
84
snATAC-seq
65
WGBS
53
pCHi-C
31
Hi-C
19
RRBS
17
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
65
DNA methylation
Date released
41
May, 2022
9
August, 2017
6
February, 2021
5
November, 2018
4
July, 2019
Available data
41
zippedFastqFolder
15
fastq
10
bam
9
bed bedMethyl
9
bigBed bedMethyl
9
bigWig
6
tsv
Organism
65
Homo sapiens
Biosample type
47
primary cell
17
tissue
1
cell line
Organ
51
pancreas
47
epithelium
heart
6
adipose tissue
6
connective tissue
5
liver
2
blood vessel
spleen
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
18
AMP
Genome assembly (visualization)
9
GRCh38
Lab
47
Klaus Kaestner, Upenn
18
AMP-T2D consortium
organ_slims!
heart
spleen
BIOSAMPLE
ASSAY
65 results
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WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
body of pancreas
2
+ See 3 more…
cell line
HepG2
1
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