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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1344
total RNA-seq
1279
ChIP-seq
508
ATAC-seq
362
single cell RNA-seq
206
DNase-seq
87
RNA microarray
84
snATAC-seq
70
WGBS
54
pCHi-C
30
Hi-C
19
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
89
DNA methylation
Date released
41
May, 2022
25
July, 2019
11
August, 2017
6
February, 2021
6
November, 2018
Available data
41
zippedFastqFolder
33
bed bedMethyl
33
bigBed bedMethyl
18
fastq
17
bam
16
bigWig
6
tsv
Organism
89
Homo sapiens
Biosample type
56
primary cell
33
tissue
Organ
53
epithelium
53
pancreas
10
heart
7
connective tissue
liver
6
adipose tissue
6
musculature of body
4
kidney
3
vasculature
2
blood vessel
2
brain
2
spleen
1
eye
1
limb
1
pericardium
Project
47
HPAP
42
AMP
Genome assembly (visualization)
17
hg19
16
GRCh38
Lab
47
Klaus Kaestner, Upenn
42
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
liver
BIOSAMPLE
ASSAY
89 results
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WGBS
RRBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 6 more…
tissue
heart left ventricle
4
1
skeletal muscle tissue
4
adipose tissue
3
pancreas
2
1
subcutaneous abdominal adipose tissue
3
+ See 11 more…
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