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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
443
ChIP-seq
270
ATAC-seq
262
single cell RNA-seq
218
total RNA-seq
87
RNA microarray
83
snATAC-seq
70
WGBS
51
pCHi-C
25
DNase-seq
10
MeRIP-seq
6
Hi-C
5
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
72
DNA methylation
Date released
41
May, 2022
11
July, 2019
8
August, 2017
6
February, 2021
6
November, 2018
Available data
41
zippedFastqFolder
17
bam
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
15
fastq
6
tsv
Organism
72
Homo sapiens
Biosample type
47
primary cell
25
tissue
Organ
51
pancreas
47
epithelium
8
heart
6
adipose tissue
6
connective tissue
liver
3
musculature of body
2
blood vessel
2
spleen
2
vasculature
1
limb
Project
47
HPAP
25
AMP
Genome assembly (visualization)
hg19
16
GRCh38
Lab
47
Klaus Kaestner, Upenn
25
AMP-T2D consortium
organ_slims!
liver
assembly!
hg19
BIOSAMPLE
ASSAY
72 results
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WGBS
RRBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
adipose tissue
3
subcutaneous abdominal adipose tissue
3
aorta
2
body of pancreas
2
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