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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1101
ChIP-seq
941
total RNA-seq
356
ATAC-seq
288
single cell RNA-seq
198
DNase-seq
87
RNA microarray
73
snATAC-seq
53
pCHi-C
21
Hi-C
19
WGBS
17
RRBS
13
small RNA-seq
5
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
STARR-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
36
DNA methylation
Date released
23
July, 2019
11
August, 2017
2
November, 2018
Available data
27
bed bedMethyl
27
bigBed bedMethyl
13
bam
12
bigWig
8
fastq
Organism
36
Homo sapiens
Biosample type
27
tissue
9
primary cell
Organ
53
epithelium
pancreas
10
heart
7
connective tissue
liver
6
adipose tissue
6
musculature of body
4
kidney
3
vasculature
2
blood vessel
2
brain
2
spleen
1
eye
1
limb
1
pericardium
Project
36
AMP
Genome assembly (visualization)
15
hg19
12
GRCh38
Lab
36
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
liver
pancreas
BIOSAMPLE
ASSAY
36 results
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WGBS
RRBS
tissue
heart left ventricle
4
1
skeletal muscle tissue
4
adipose tissue
3
subcutaneous abdominal adipose tissue
3
aorta
2
+ See 8 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
kidney epithelial cell
1
+ See 4 more…
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