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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1106
total RNA-seq
914
ChIP-seq
448
ATAC-seq
234
single cell RNA-seq
197
DNase-seq
87
RNA microarray
57
snATAC-seq
55
WGBS
53
pCHi-C
30
Hi-C
16
RRBS
15
small RNA-seq
10
MeRIP-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
STARR-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
55
DNA methylation
Date released
41
May, 2022
11
July, 2019
3
August, 2017
Available data
41
zippedFastqFolder
17
bam
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
fastq
6
tsv
Organism
55
Homo sapiens
Biosample type
41
primary cell
14
tissue
Organ
41
epithelium
41
pancreas
8
heart
3
adipose tissue
3
connective tissue
liver
2
blood vessel
2
vasculature
1
limb
1
musculature of body
Project
41
HPAP
14
AMP
Genome assembly (visualization)
8
GRCh38
Lab
41
Klaus Kaestner, Upenn
14
AMP-T2D consortium
organ_slims!
liver
files.file_type!
fastq
BIOSAMPLE
ASSAY
55 results
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WGBS
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
tissue
heart left ventricle
4
subcutaneous abdominal adipose tissue
3
aorta
2
heart right ventricle
2
heart
1
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