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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
212
ChIP-seq
188
ATAC-seq
152
single cell RNA-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
47
DNA methylation
1
Transcription
Date released
41
May, 2022
6
February, 2021
1
March, 2023
Available data
41
zippedFastqFolder
6
fastq
6
tsv
Organism
47
Homo sapiens
Biosample type
47
primary cell
1
cell line
Organ
47
epithelium
47
pancreas
Project
47
HPAP
1
community
Lab
47
Klaus Kaestner, Upenn
AMP-T2D consortium
1
Anna Gloyn, Oxford
organ_slims!
musculature of body
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
48 results
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WGBS
shRNA RNA-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cell line
EndoC-BH1
1
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