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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1759
ChIP-seq
1123
total RNA-seq
524
ATAC-seq
368
single cell RNA-seq
177
DNase-seq
86
RNA microarray
83
snATAC-seq
68
WGBS
54
pCHi-C
28
Hi-C
16
RRBS
13
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
68
DNA methylation
1
Transcription
Date released
41
May, 2022
11
July, 2019
7
November, 2018
6
February, 2021
3
August, 2017
1
March, 2023
Available data
41
zippedFastqFolder
15
bam
14
bed bedMethyl
14
bigBed bedMethyl
14
bigWig
14
fastq
6
tsv
Organism
68
Homo sapiens
Biosample type
47
primary cell
20
tissue
2
cell line
Organ
51
pancreas
47
epithelium
8
heart
adipose tissue
6
connective tissue
5
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
musculature of body
Project
47
HPAP
21
AMP
1
community
Genome assembly (visualization)
14
GRCh38
Lab
47
Klaus Kaestner, Upenn
21
AMP-T2D consortium
1
Anna Gloyn, Oxford
organ_slims!
musculature of body
adipose tissue
BIOSAMPLE
ASSAY
69 results
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WGBS
shRNA RNA-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
liver
3
aorta
2
body of pancreas
2
heart right ventricle
2
+ See 5 more…
cell line
EndoC-BH1
1
HepG2
1
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