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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1728
ChIP-seq
967
total RNA-seq
470
ATAC-seq
344
single cell RNA-seq
168
DNase-seq
66
WGBS
56
snATAC-seq
53
pCHi-C
23
Hi-C
16
small RNA-seq
15
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
66
DNA methylation
Date released
41
May, 2022
9
August, 2017
9
July, 2019
7
November, 2018
February, 2021
Available data
41
zippedFastqFolder
15
bam
15
bed bedMethyl
15
bigBed bedMethyl
15
bigWig
11
fastq
Organism
66
Homo sapiens
Biosample type
41
primary cell
24
tissue
1
cell line
Organ
45
pancreas
41
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
2
blood vessel
2
spleen
vasculature
1
limb
musculature of body
Project
41
HPAP
25
AMP
Genome assembly (visualization)
15
GRCh38
Lab
41
Klaus Kaestner, Upenn
25
AMP-T2D consortium
organ_slims!
musculature of body
vasculature
month_released!
February, 2021
BIOSAMPLE
ASSAY
66 results
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WGBS
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
body of pancreas
2
+ See 6 more…
cell line
HepG2
1
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