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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
218
ChIP-seq
152
ATAC-seq
74
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
51
DNA methylation
8
DNA accessibility
Date released
41
May, 2022
6
February, 2021
6
November, 2018
4
June, 2019
1
August, 2017
1
October, 2019
Available data
41
zippedFastqFolder
13
fastq
12
bam
12
bigWig
8
bed narrowPeak
8
bigBed narrowPeak
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
6
tsv
4
bed bedMethyl
4
bigBed bedMethyl
Organism
59
Homo sapiens
Biosample type
47
primary cell
11
tissue
1
cell line
Organ
81
kidney
66
epithelium
59
pancreas
38
heart
37
limb
34
musculature of body
32
brain
18
ureter
15
connective tissue
13
vasculature
11
blood vessel
11
liver
8
adipose tissue
4
artery
4
eye
3
spleen
2
nerve
2
vein
Project
47
HPAP
12
AMP
Genome assembly (visualization)
12
GRCh38
6
hg19
Lab
47
Klaus Kaestner, Upenn
12
AMP-T2D consortium
BIOSAMPLE
ASSAY
59 results
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WGBS
DNase-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
body of pancreas
2
4
pancreas
2
2
islet of Langerhans
1
cell line
Panc1
1
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