Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
531
DNA accessibility
Date released
108
February, 2021
103
February, 2023
101
May, 2020
77
August, 2021
77
May, 2022
51
May, 2021
36
March, 2020
26
November, 2019
26
October, 2019
14
September, 2018
11
May, 2023
8
October, 2017
7
August, 2020
6
July, 2019
5
August, 2017
5
September, 2017
4
March, 2019
3
January, 2018
3
September, 2020
2
December, 2019
1
August, 2018
1
November, 2020
Available data
278
bed narrowPeak
176
bam
136
bigWig
87
txt
64
xls
62
fastq
47
tsv
39
zippedFastqFolder
27
bigBed narrowPeak
12
bed bed3
7
bed bedgraph
6
bed bed3+
3
bedpe bed3+
2
bed broadPeak
2
ibed
Organism
674
Homo sapiens
Biosample type
372
tissue
217
primary cell
47
in vitro differentiated cells
35
cell line
4
stem cell
Organ
153
pancreas
104
epithelium
97
bone element
79
kidney
50
heart
47
blood vessel
47
vasculature
45
artery
32
eye
31
connective tissue
26
liver
12
skeleton
9
adipose tissue
8
limb
6
brain
2
intestine
2
musculature of body
2
spleen
2
thymus
1
adrenal gland
1
blood
1
bodily fluid
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
nerve
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
598
AMP
49
HPAP
28
T1D
Genome assembly (visualization)
265
hg19
234
GRCh38
Lab
470
AMP-T2D consortium
75
Katalin Susztak, Upenn
51
Kyle Gaulton, UCSD
49
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
135
inconsistent ontology term
2
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
675 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
RNA microarray
pCHi-C
tissue
bone element
84
kidney
75
islet of Langerhans
68
4
coronary artery
36
liver
20
1
+ See 48 more…
primary cell
pancreatic alpha cell
35
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
monocyte
15
1
+ See 42 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
embryonic stem cell
6
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 9 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
HepG2
1
2
GM12878
1
MCF-7
1
+ See 3 more…
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
Download