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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1868
ChIP-seq
1512
total RNA-seq
527
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
25
pCHi-C
24
Hi-C
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
March, 2020
17
May, 2021
4
October, 2019
2
February, 2021
1
August, 2018
1
February, 2023
1
May, 2020
Available data
2
bed bed3+
1
bam
1
bedpe bed3+
1
fastq
1
tsv
Organism
25
Homo sapiens
Biosample type
17
primary cell
5
tissue
3
cell line
1
in vitro differentiated cells
Organ
4
eye
3
connective tissue
2
liver
1
adipose tissue
1
bone element
1
bone marrow
1
epithelium
1
pancreas
1
thymus
Project
17
T1D
9
AMP
Genome assembly (visualization)
2
hg19
Lab
17
Kyle Gaulton, UCSD
9
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
March, 2020
assay_title!
RRBS
BIOSAMPLE
ASSAY
26 results
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pCHi-C
CRISPR genome editing followed by sgRNA sequencing
primary cell
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
+ See 11 more…
tissue
islet of Langerhans
4
thymus
1
cell line
HepG2
2
EndoC_BH1
1
in vitro differentiated cells
white fat cell
1
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