Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
86
February, 2021
32
March, 2020
17
May, 2021
5
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
1
August, 2021
1
May, 2020
Available data
84
txt
33
tsv
6
fastq
5
bigWig
3
bedpe bed3+
2
bed bed3+
2
ibed
1
bam
Organism
148
Homo sapiens
Biosample type
112
tissue
17
primary cell
9
in vitro differentiated cells
6
cell line
5
stem cell
Organ
85
bone element
6
connective tissue
4
eye
4
kidney
3
adipose tissue
3
heart
3
liver
2
brain
2
intestine
2
thymus
1
adrenal gland
1
blood vessel
1
bone marrow
1
embryo
1
epithelium
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
musculature of body
1
ovary
1
pancreas
1
small intestine
1
spleen
1
stomach
1
urinary bladder
1
vasculature
Project
132
AMP
17
T1D
Genome assembly (visualization)
5
hg18
4
hg19
Lab
132
AMP-T2D consortium
17
Kyle Gaulton, UCSD
Audit category:
93
inconsistent ontology term
2
audit script error
BIOSAMPLE
ASSAY
149 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
pCHi-C
GRO-seq
tissue
bone element
84
islet of Langerhans
4
thymus
2
Ammon's horn
1
adipose tissue
1
+ See 20 more…
primary cell
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
+ See 11 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
Posterior foregut
1
definitive endodermal cell
1
embryonic stem cell
1
lymphocyte of B lineage (iPSC)
1
+ See 3 more…
cell line
HepG2
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
fibroblast cell line
1
stem cell
hESC
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
Download