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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
964
ChIP-seq
496
total RNA-seq
271
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
48
WGBS
34
DNase-seq
32
pCHi-C
18
Hi-C
10
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
16
May, 2021
12
March, 2020
5
January, 2018
2
February, 2021
1
August, 2018
1
May, 2020
Available data
11
tsv
6
fastq
5
bigWig
3
bedpe bed3+
2
bed bed3+
2
ibed
1
bam
Organism
37
Homo sapiens
Biosample type
tissue
17
primary cell
9
in vitro differentiated cells
6
cell line
5
stem cell
Organ
4
connective tissue
2
kidney
2
liver
1
adipose tissue
1
bone element
1
bone marrow
1
embryo
1
mammary gland
Project
21
AMP
16
T1D
Genome assembly (visualization)
5
hg18
4
hg19
Lab
21
AMP-T2D consortium
16
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
biosample_type!
tissue
BIOSAMPLE
ASSAY
37 results
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pCHi-C
GRO-seq
primary cell
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
+ See 11 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
Posterior foregut
1
definitive endodermal cell
1
embryonic stem cell
1
lymphocyte of B lineage (iPSC)
1
+ See 3 more…
cell line
HepG2
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
fibroblast cell line
1
stem cell
hESC
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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