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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
188
ATAC-seq
172
ChIP-seq
152
single cell RNA-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
152
Transcription
Date released
47
September, 2023
40
September, 2020
33
May, 2022
17
May, 2021
12
February, 2021
9
April, 2020
8
August, 2021
3
May, 2023
Available data
52
zippedFastqFolder
34
fastq
8
txt
Organism
169
Homo sapiens
Biosample type
101
primary cell
68
tissue
Organ
58
kidney
9
lung
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
85
HPAP
47
KPMP
17
T1D
11
AMP
9
LungMap
Lab
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
17
Kyle Gaulton, UCSD
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
169 results
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single cell RNA-seq
pCHi-C
primary cell
Langerhans cell
85
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
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tissue
kidney
58
lung
9
thymus
1
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