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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
188
ATAC-seq
172
ChIP-seq
152
single cell RNA-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
82
DNA accessibility
Date released
27
February, 2021
21
May, 2022
17
May, 2021
16
January, 2021
10
April, 2020
6
August, 2021
2
February, 2023
Available data
27
fastq
21
zippedFastqFolder
Organism
98
Homo sapiens
Biosample type
72
primary cell
27
tissue
Organ
10
lung
10
pancreas
8
blood
8
bodily fluid
6
kidney
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
48
HPAP
35
T1D
10
LungMap
6
AMP
Lab
48
Klaus Kaestner, Upenn
AMP-T2D consortium
35
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
27
audit script error
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
99 results
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snATAC-seq
pCHi-C
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
+ See 12 more…
tissue
lung
10
islet of Langerhans
6
kidney
6
pancreas
4
thymus
1
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