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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
526
ChIP-seq
258
ATAC-seq
209
total RNA-seq
158
single cell RNA-seq
85
RNA microarray
83
snATAC-seq
69
WGBS
26
DNase-seq
22
pCHi-C
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
17
May, 2021
4
October, 2019
1
August, 2018
Available data
tsv
1
bedpe bed3+
1
fastq
Organism
22
Homo sapiens
Biosample type
16
primary cell
5
tissue
1
in vitro differentiated cells
Organ
4
eye
2
connective tissue
1
adipose tissue
1
bone element
1
bone marrow
1
thymus
Project
17
T1D
5
AMP
Genome assembly (visualization)
hg19
Lab
17
Kyle Gaulton, UCSD
5
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
tsv
assembly!
hg19
BIOSAMPLE
ASSAY
22 results
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pCHi-C
primary cell
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
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tissue
islet of Langerhans
4
thymus
1
in vitro differentiated cells
white fat cell
1
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