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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1511
ChIP-seq
1299
total RNA-seq
460
ATAC-seq
361
single cell RNA-seq
211
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
35
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
28
March, 2020
May, 2021
4
October, 2019
2
February, 2021
1
May, 2020
Available data
29
tsv
2
bed bed3+
1
bam
Organism
35
Homo sapiens
Biosample type
24
tissue
6
cell line
in vitro differentiated cells
4
stem cell
1
primary cell
Organ
4
eye
3
connective tissue
3
heart
3
liver
2
brain
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
blood vessel
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
musculature of body
1
ovary
1
pancreas
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vasculature
Project
35
AMP
Genome assembly (visualization)
2
hg19
Lab
35
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
month_released!
May, 2021
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
35 results
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pCHi-C
tissue
islet of Langerhans
4
Ammon's horn
1
adipose tissue
1
adrenal gland
1
aorta
1
+ See 16 more…
cell line
HepG2
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
fibroblast cell line
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
primary cell
osteoblast
1
See all biosamples
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