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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
465
total RNA-seq
86
ChIP-seq
8
ATAC-seq
8
DNase-seq
6
WGBS
4
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
8
DNA accessibility
Date released
2
February, 2021
2
March, 2020
1
August, 2017
1
February, 2023
1
January, 2018
1
May, 2021
1
November, 2019
1
November, 2020
1
October, 2017
1
October, 2019
Available data
6
bam
6
bed narrowPeak
5
bigWig
2
bigBed narrowPeak
2
fastq
2
tsv
1
bed bed3
1
bed bed3+
Organism
12
Homo sapiens
Biosample type
in vitro differentiated cells
7
tissue
4
primary cell
1
stem cell
Organ
153
pancreas
103
epithelium
77
kidney
50
heart
47
blood vessel
47
vasculature
45
artery
32
eye
26
liver
13
bone element
12
connective tissue
12
skeleton
8
limb
7
adipose tissue
6
brain
2
intestine
2
musculature of body
2
spleen
2
thymus
1
adrenal gland
1
blood
1
bodily fluid
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
nerve
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
11
AMP
1
T1D
Genome assembly (visualization)
9
hg19
5
GRCh38
Lab
11
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
12 results
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ATAC-seq
pCHi-C
tissue
adipose tissue
3
1
adipose tissue(adipose white tissue)
1
omental fat pad
1
subcutaneous adipose tissue
1
primary cell
osteoblast
2
1
adult endothelial progenitor cell
1
stem cell
mesenchymal stem cell
1
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