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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
222
ChIP-seq
99
single cell RNA-seq
78
total RNA-seq
49
ATAC-seq
37
DNase-seq
10
WGBS
8
Hi-C
4
pCHi-C
2
RRBS
1
FAIRE-seq
1
small RNA-seq
0
shRNA RNA-seq
Assay category
222
DNA binding
Target of assay
165
histone
165
histone modification
102
broad histone mark
63
narrow histone mark
37
control
20
transcription factor
14
RNA binding protein
Date released
66
May, 2019
57
April, 2019
45
October, 2019
40
May, 2024
6
February, 2021
5
June, 2019
3
November, 2017
Available data
183
bigWig
181
bam
180
bed narrowPeak
130
bigBed narrowPeak
6
tagAlign
4
bed broadPeak
4
bigBed broadPeak
3
fastq
Organism
222
Homo sapiens
Biosample type
191
tissue
25
primary cell
6
cell line
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
134
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
222
AMP
Genome assembly (visualization)
179
GRCh38
143
hg19
Lab
182
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
4
inconsistent ontology term
BIOSAMPLE
ASSAY
222 results
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Clear Filters
ChIP-seq
tissue
left cardiac atrium
40
heart left ventricle
35
tibial artery
23
ascending aorta
16
thoracic aorta
16
+ See 6 more…
primary cell
endothelial cell of umbilical vein
17
cardiac fibroblast
5
brain microvascular endothelial cell
3
cell line
smooth muscle cell of the coronary artery
6
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