Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
356
ATAC-seq
263
single cell RNA-seq
253
ChIP-seq
245
total RNA-seq
87
RNA microarray
84
snATAC-seq
57
WGBS
56
pCHi-C
34
Hi-C
21
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
3
DNA accessibility
1
Transcription
Date released
84
February, 2021
2
December, 2019
2
October, 2019
1
August, 2017
1
August, 2021
1
March, 2023
Available data
bam
209
bed narrowPeak
209
bigBed narrowPeak
209
bigWig
206
bed broadPeak
206
bigBed broadPeak
204
bed bed3+
84
txt
12
fastq
2
tsv
Organism
89
Homo sapiens
Biosample type
88
tissue
2
primary cell
1
cell line
Organ
84
bone element
4
kidney
3
epithelium
1
adipose tissue
1
connective tissue
1
liver
Project
90
AMP
1
community
Lab
90
AMP-T2D consortium
1
Anna Gloyn, Oxford
Audit category:
84
inconsistent ontology term
2
audit script error
files.file_type!
bam
BIOSAMPLE
ASSAY
91 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
DNase-seq
shRNA RNA-seq
tissue
bone element
84
kidney interstitium
1
renal glomerulus
1
right lobe of liver
1
subcutaneous adipose tissue
1
primary cell
kidney glomerular epithelial cell
1
kidney tubule cell
1
cell line
EndoC-BH1
1
Download