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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
0
shRNA RNA-seq
Assay category
200
DNA accessibility
Date released
100
May, 2020
39
May, 2022
29
May, 2021
14
September, 2018
12
February, 2023
7
August, 2020
5
September, 2017
3
August, 2017
3
September, 2020
2
February, 2021
2
October, 2019
1
November, 2020
Available data
85
bam
78
bigWig
39
bed narrowPeak
39
zippedFastqFolder
32
fastq
22
bigBed narrowPeak
12
tsv
1
bed bed3
1
bed bed3+
Organism
217
Homo sapiens
Biosample type
285
tissue
217
primary cell
47
in vitro differentiated cells
36
cell line
4
stem cell
Organ
72
epithelium
71
pancreas
4
connective tissue
1
bone element
1
bone marrow
1
liver
Project
152
AMP
49
HPAP
16
T1D
Genome assembly (visualization)
85
hg19
49
GRCh38
Lab
152
AMP-T2D consortium
49
Klaus Kaestner, Upenn
16
Kyle Gaulton, UCSD
Audit category:
13
inconsistent ontology term
BIOSAMPLE
ASSAY
217 results
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ATAC-seq
pCHi-C
primary cell
pancreatic alpha cell
35
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
monocyte
15
1
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