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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
0
siRNA RNA-seq
Assay category
142
DNA binding
Target of assay
112
histone
112
histone modification
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
47
August, 2017
33
May, 2021
32
December, 2017
16
February, 2018
14
August, 2021
Available data
109
bam
89
fastq
78
bigWig
73
bed narrowPeak
26
tagAlign
15
bed bed3+
7
bigBed narrowPeak
Organism
142
Homo sapiens
Biosample type
604
tissue
466
cell line
157
primary cell
142
in vitro differentiated cells
2
stem cell
Organ
47
connective tissue
18
embryo
15
epithelium
8
liver
3
pancreas
Project
142
AMP
Genome assembly (visualization)
83
GRCh38
83
hg19
Lab
115
AMP-T2D consortium
27
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
12
inconsistent control read length
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
142 results
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ChIP-seq
in vitro differentiated cells
adipocyte
47
embryonic stem cell
29
neural progenitor cell
14
pancreatic endoderm
14
hepatocyte
8
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