Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1435
ChIP-seq
1113
total RNA-seq
375
ATAC-seq
286
single cell RNA-seq
172
DNase-seq
87
RNA microarray
73
snATAC-seq
pCHi-C
24
WGBS
22
Hi-C
17
RRBS
12
small RNA-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
286
Transcription
Date released
106
August, 2021
47
September, 2023
40
September, 2020
34
May, 2022
18
February, 2021
11
July, 2018
10
April, 2018
9
April, 2020
3
December, 2019
3
May, 2023
2
June, 2018
1
February, 2023
1
November, 2018
1
September, 2018
Available data
128
tsv
59
fastq
52
zippedFastqFolder
23
bam
23
bigWig
13
txt
8
csv
Organism
286
Homo sapiens
Biosample type
174
tissue
110
primary cell
2
in vitro differentiated cells
Organ
93
heart
pancreas
70
epithelium
64
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
brain
2
artery
1
liver
1
musculature of body
Project
145
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
23
GRCh38
23
hg19
Lab
134
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
7
audit script error
4
inconsistent ontology term
assay_title!
pCHi-C
organ_slims!
pancreas
brain
BIOSAMPLE
ASSAY
286 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
primary cell
Langerhans cell
85
pancreatic cell
9
mesenchymal cell
6
endothelial cell
2
enteroendocrine cell
2
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
Download