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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
964
ChIP-seq
496
total RNA-seq
271
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
48
WGBS
34
DNase-seq
32
pCHi-C
18
Hi-C
10
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
189
Transcription
Target of assay
3
control
Date released
48
July, 2018
43
April, 2018
40
September, 2020
33
May, 2022
12
February, 2021
4
August, 2021
3
August, 2018
3
July, 2019
3
June, 2018
2
December, 2019
2
February, 2023
1
November, 2018
1
September, 2018
Available data
128
fastq
102
tsv
100
bam
100
bigWig
52
zippedFastqFolder
2
bed bed3+
2
csv
Organism
195
Homo sapiens
Biosample type
187
primary cell
tissue
4
cell line
4
in vitro differentiated cells
Organ
76
pancreas
72
epithelium
6
connective tissue
3
brain
Project
108
AMP
85
HPAP
2
T1D
Genome assembly (visualization)
102
hg19
100
GRCh38
Lab
106
AMP-T2D consortium
85
Klaus Kaestner, Upenn
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
2
audit script error
biosample_type!
tissue
BIOSAMPLE
ASSAY
195 results
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single cell RNA-seq
Capture-C
HiChIP
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 14 more…
cell line
EndoC_BH1
2
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
adipocyte
1
osteoblast
1
See all biosamples
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