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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
481
ChIP-seq
395
ATAC-seq
255
single cell RNA-seq
249
total RNA-seq
87
RNA microarray
84
snATAC-seq
58
WGBS
57
pCHi-C
29
Hi-C
21
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
255
Transcription
Date released
110
August, 2021
47
September, 2023
40
September, 2020
34
May, 2022
12
February, 2021
9
April, 2020
3
December, 2019
3
May, 2023
1
February, 2023
Available data
211
tsv
134
fastq
106
bam
bigWig
52
zippedFastqFolder
13
txt
csv
2
bed bed3+
Organism
259
Homo sapiens
Biosample type
168
tissue
85
primary cell
4
in vitro differentiated cells
2
cell line
Organ
93
heart
59
kidney
9
lung
6
blood vessel
6
vasculature
2
artery
2
connective tissue
2
epithelium
2
pancreas
1
musculature of body
Project
118
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
2
hg19
Lab
105
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
2
audit script error
files.file_type!
csv
bigWig
BIOSAMPLE
ASSAY
259 results
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single cell RNA-seq
Capture-C
tissue
kidney
59
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 12 more…
primary cell
Langerhans cell
85
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
adipocyte
1
osteoblast
1
cell line
EndoC_BH1
2
See all biosamples
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