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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
552
DNA binding
1
Transcription
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
50
May, 2020
49
November, 2018
48
August, 2017
22
August, 2021
5
October, 2019
1
February, 2021
Available data
510
bam
452
fastq
432
bigWig
413
bed narrowPeak
352
bigBed narrowPeak
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
6
bed bed3+
3
tar
1
csv
Organism
553
Homo sapiens
Biosample type
378
cell line
156
tissue
15
in vitro differentiated cells
4
primary cell
Organ
553
liver
298
pancreas
227
heart
221
brain
199
epithelium
157
connective tissue
116
kidney
108
vasculature
105
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
40
musculature of body
36
artery
35
nerve
22
embryo
20
spleen
17
vein
9
lung
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
553
AMP
Genome assembly (visualization)
429
hg19
360
GRCh38
Lab
535
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
553 results
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ChIP-seq
single cell RNA-seq
cell line
HepG2
378
tissue
liver
145
1
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
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