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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1290
total RNA-seq
974
ChIP-seq
470
ATAC-seq
235
single cell RNA-seq
200
DNase-seq
87
RNA microarray
58
WGBS
57
snATAC-seq
56
pCHi-C
33
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
235
Transcription
Target of assay
3
control
Date released
107
August, 2021
90
February, 2021
47
September, 2023
34
May, 2022
18
September, 2020
9
April, 2020
5
April, 2018
5
December, 2019
3
July, 2019
3
May, 2023
1
February, 2023
Available data
207
tsv
fastq
100
bam
100
bigWig
97
txt
52
zippedFastqFolder
8
csv
Organism
321
Homo sapiens
Biosample type
261
tissue
59
primary cell
2
in vitro differentiated cells
Organ
93
heart
84
bone element
66
kidney
9
lung
6
blood vessel
6
vasculature
5
epithelium
5
pancreas
3
brain
2
artery
2
connective tissue
1
adipose tissue
1
liver
1
musculature of body
Project
215
AMP
51
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
8
GRCh38
8
hg19
Lab
204
AMP-T2D consortium
51
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
86
inconsistent ontology term
9
audit script error
files.file_type!
fastq
BIOSAMPLE
ASSAY
322 results
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single cell RNA-seq
RNA microarray
tissue
bone element
84
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 17 more…
primary cell
Langerhans cell
51
pancreatic acinar cell
3
cerebellar granule cell
2
Purkinje cell
1
pancreatic ductal cell
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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