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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
218
ChIP-seq
152
ATAC-seq
74
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
74
Transcription
51
DNA methylation
Date released
41
May, 2022
37
July, 2018
33
April, 2018
6
February, 2021
4
November, 2018
3
August, 2018
1
June, 2018
Available data
80
tsv
79
fastq
78
bam
78
bigWig
41
zippedFastqFolder
4
bed bedMethyl
4
bigBed bedMethyl
Organism
125
Homo sapiens
Biosample type
121
primary cell
4
tissue
Organ
125
pancreas
117
epithelium
101
heart
64
kidney
10
connective tissue
9
lung
8
blood vessel
8
vasculature
6
adipose tissue
6
liver
3
brain
2
artery
2
musculature of body
2
spleen
1
limb
Project
78
AMP
47
HPAP
Genome assembly (visualization)
78
GRCh38
74
hg19
Lab
78
AMP-T2D consortium
47
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
BIOSAMPLE
ASSAY
125 results
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single cell RNA-seq
WGBS
primary cell
pancreatic alpha cell
12
31
pancreatic beta cell
12
16
pancreatic acinar cell
12
pancreatic delta cell
11
pancreatic ductal cell
10
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tissue
body of pancreas
2
pancreas
2
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