Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1653
ChIP-seq
1110
total RNA-seq
359
ATAC-seq
255
single cell RNA-seq
204
DNase-seq
87
RNA microarray
56
pCHi-C
51
snATAC-seq
25
Hi-C
24
WGBS
19
RRBS
16
small RNA-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
255
Transcription
Target of assay
3
control
Date released
106
August, 2021
47
September, 2023
40
September, 2020
May, 2022
21
February, 2021
11
July, 2018
10
April, 2018
9
April, 2020
3
December, 2019
3
July, 2019
3
May, 2023
2
June, 2018
1
February, 2023
1
November, 2018
1
September, 2018
Available data
134
tsv
59
fastq
26
bam
26
bigWig
19
zippedFastqFolder
13
txt
8
csv
Organism
258
Homo sapiens
Biosample type
176
tissue
80
primary cell
2
in vitro differentiated cells
Organ
93
heart
pancreas
70
epithelium
67
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
Project
150
AMP
52
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
26
GRCh38
26
hg19
Lab
139
AMP-T2D consortium
52
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
7
audit script error
4
inconsistent ontology term
month_released!
May, 2022
organ_slims!
pancreas
BIOSAMPLE
ASSAY
258 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
snDrop-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 15 more…
primary cell
Langerhans cell
52
pancreatic cell
9
mesenchymal cell
6
cerebellar granule cell
2
endothelial cell
2
+ See 5 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
Download