Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
605
ChIP-seq
297
ATAC-seq
256
single cell RNA-seq
250
total RNA-seq
85
RNA microarray
58
WGBS
57
pCHi-C
55
snATAC-seq
28
Hi-C
21
RRBS
10
MeRIP-seq
5
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
256
Transcription
Date released
106
August, 2021
47
September, 2023
40
September, 2020
34
May, 2022
13
February, 2021
9
April, 2020
3
May, 2023
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
98
tsv
52
zippedFastqFolder
36
fastq
8
txt
3
csv
Organism
256
Homo sapiens
Biosample type
169
tissue
87
primary cell
Organ
93
heart
59
kidney
9
lung
6
blood vessel
6
vasculature
2
artery
1
liver
1
musculature of body
Project
115
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
GRCh38
100
hg19
Lab
104
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
audit script error
2
inconsistent ontology term
audit.ERROR.category!
audit script error
assembly!
GRCh38
BIOSAMPLE
ASSAY
256 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
tissue
kidney
59
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
primary cell
Langerhans cell
85
pancreatic cell
2
See all biosamples
Download