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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
814
ChIP-seq
496
total RNA-seq
271
ATAC-seq
186
single cell RNA-seq
56
snATAC-seq
48
WGBS
34
DNase-seq
32
pCHi-C
18
Hi-C
10
RRBS
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
MeRIP-seq
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
186
Transcription
Target of assay
control
Date released
48
July, 2018
43
April, 2018
40
September, 2020
33
May, 2022
12
February, 2021
3
August, 2018
3
June, 2018
2
December, 2019
1
November, 2018
1
September, 2018
Available data
128
fastq
99
tsv
97
bam
97
bigWig
52
zippedFastqFolder
2
csv
Organism
186
Homo sapiens
Biosample type
184
primary cell
tissue
2
in vitro differentiated cells
Organ
74
pancreas
70
epithelium
4
connective tissue
Project
101
AMP
85
HPAP
Genome assembly (visualization)
97
GRCh38
97
hg19
Lab
101
AMP-T2D consortium
85
Klaus Kaestner, Upenn
Audit category:
9
inconsistent ontology term
2
audit script error
biosample_type!
tissue
target.investigated_as!
control
BIOSAMPLE
ASSAY
186 results
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single cell RNA-seq
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
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in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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