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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
477
ChIP-seq
383
total RNA-seq
242
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
47
WGBS
32
DNase-seq
22
pCHi-C
14
Hi-C
10
RRBS
4
GRO-seq
2
Capture-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
189
Transcription
Target of assay
3
control
Date released
48
July, 2018
43
April, 2018
40
September, 2020
33
May, 2022
16
May, 2021
13
February, 2021
4
August, 2018
4
March, 2020
3
July, 2019
3
June, 2018
2
December, 2019
1
November, 2018
1
September, 2018
Available data
129
fastq
104
tsv
101
bam
100
bigWig
52
zippedFastqFolder
3
bedpe bed3+
2
csv
2
ibed
1
bed bed3+
Organism
211
Homo sapiens
Biosample type
205
tissue
204
primary cell
7
in vitro differentiated cells
6
cell line
4
stem cell
Organ
74
pancreas
70
epithelium
7
connective tissue
3
brain
1
adipose tissue
1
bone element
1
bone marrow
Project
110
AMP
85
HPAP
16
T1D
Genome assembly (visualization)
103
hg19
100
GRCh38
Lab
110
AMP-T2D consortium
85
Klaus Kaestner, Upenn
16
Kyle Gaulton, UCSD
Audit category:
13
inconsistent ontology term
2
audit script error
BIOSAMPLE
ASSAY
211 results
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single cell RNA-seq
pCHi-C
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 30 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
2
embryonic stem cell
1
lymphocyte of B lineage (iPSC)
1
white fat cell
1
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