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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
187
Transcription
10
DNA methylation
Target of assay
3
control
Date released
48
July, 2018
43
April, 2018
40
September, 2020
33
May, 2022
12
February, 2021
12
July, 2019
3
August, 2018
3
June, 2018
1
August, 2017
1
November, 2018
1
September, 2018
Available data
129
fastq
100
bam
100
bigWig
100
tsv
52
zippedFastqFolder
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
Organism
197
Homo sapiens
Biosample type
197
primary cell
185
tissue
2
in vitro differentiated cells
Organ
76
epithelium
74
pancreas
5
connective tissue
4
brain
3
kidney
1
eye
1
heart
1
liver
1
musculature of body
1
vasculature
Project
112
AMP
85
HPAP
Genome assembly (visualization)
110
hg19
100
GRCh38
Lab
112
AMP-T2D consortium
85
Klaus Kaestner, Upenn
Audit category:
9
inconsistent ontology term
BIOSAMPLE
ASSAY
197 results
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single cell RNA-seq
RRBS
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
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