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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
293
ATAC-seq
293
ChIP-seq
114
total RNA-seq
85
RNA microarray
73
single cell RNA-seq
36
snATAC-seq
31
Hi-C
25
pCHi-C
21
RRBS
10
MeRIP-seq
10
WGBS
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
73
Transcription
Date released
47
September, 2023
9
April, 2020
8
August, 2021
3
May, 2023
1
December, 2019
1
February, 2021
1
February, 2023
1
May, 2022
1
November, 2018
1
September, 2018
Available data
tsv
bam
106
bigWig
100
fastq
13
txt
8
csv
Organism
73
Homo sapiens
Biosample type
71
tissue
2
primary cell
Organ
59
kidney
9
lung
1
heart
1
liver
1
musculature of body
Project
47
KPMP
17
AMP
9
LungMap
Lab
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
6
AMP-T2D consortium
files.file_type!
bam
tsv
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
73 results
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single cell RNA-seq
tissue
kidney
59
lung
9
heart
1
liver
1
skeletal muscle tissue
1
primary cell
pancreatic cell
2
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