Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1823
ChIP-seq
495
ATAC-seq
212
DNase-seq
212
total RNA-seq
145
single cell RNA-seq
69
WGBS
57
snATAC-seq
34
Hi-C
24
pCHi-C
21
RRBS
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
RNA microarray
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
145
Transcription
Date released
47
September, 2023
40
September, 2020
34
May, 2022
February, 2021
9
April, 2020
8
August, 2021
3
May, 2023
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
tsv
116
fastq
100
bam
100
bigWig
52
zippedFastqFolder
8
txt
2
csv
Organism
145
Homo sapiens
Biosample type
75
primary cell
70
tissue
Organ
59
kidney
9
lung
1
heart
1
musculature of body
Project
73
HPAP
47
KPMP
16
AMP
9
LungMap
Lab
73
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
5
AMP-T2D consortium
files.file_type!
tsv
month_released!
February, 2021
BIOSAMPLE
ASSAY
145 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
primary cell
Langerhans cell
73
pancreatic cell
2
tissue
kidney
59
lung
9
heart
1
skeletal muscle tissue
1
Download