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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1553
ChIP-seq
1206
total RNA-seq
255
ATAC-seq
181
DNase-seq
86
RNA microarray
76
single cell RNA-seq
40
pCHi-C
28
WGBS
22
snATAC-seq
21
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
76
Transcription
Date released
August, 2021
47
September, 2023
9
April, 2020
6
April, 2018
6
February, 2021
3
December, 2019
3
May, 2023
1
February, 2023
1
May, 2022
Available data
13
tsv
6
bam
6
bigWig
6
csv
6
fastq
5
txt
Organism
76
Homo sapiens
Biosample type
primary cell
74
tissue
2
in vitro differentiated cells
Organ
56
kidney
9
lung
6
pancreas
1
heart
1
liver
1
musculature of body
Project
47
KPMP
20
AMP
9
LungMap
Genome assembly (visualization)
6
GRCh38
6
hg19
Lab
47
KPMP
17
AMP-T2D consortium
9
Xin Sun, UCSD
3
Katalin Susztak, Upenn
Audit category:
7
audit script error
2
inconsistent ontology term
month_released!
August, 2021
assay_title!
CRISPR genome editing followed by sgRNA sequencing
biosample_type!
primary cell
BIOSAMPLE
ASSAY
76 results
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single cell RNA-seq
tissue
kidney
56
lung
9
islet of Langerhans
6
heart
1
liver
1
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in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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